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Businesses cautioned on new VAT penalties ahead of filing deadline  

HM Revenue and Customs (HMRC) has urged Value Added Tax (VAT) registered businesses to file their VAT returns and pay on time, ahead of new penalties being applied.

The agency said the new penalties will be more proportionate for businesses who submit their VAT returns or pay their VAT late. The first monthly returns and payments affected by the penalties are due by 7 March 2023.


The late payment penalties and points-based late submission penalties were introduced from 1 January 2023, replacing the VAT default surcharge, and apply to accounting periods which start after that date.

The penalties for late VAT returns also apply to businesses that submit nil returns and repayment returns. Changes have also been made to how interest is calculated.

“Our aim is to help customers get things right before monetary penalties are applied; a points-based system for late VAT returns will not punish the occasional error,” Paul Riley, director of tax administration at HMRC, said.

“We are contacting 2.5 million VAT registered businesses about the changes and will continue to support customers to help them manage their tax affairs and payments.”

The changes to VAT penalties and interest payments are:

  • Late submission penalties - These work on a points-based system. For each VAT return submitted late, customers will receive a penalty point until they reach the penalty point threshold – at which stage they will receive a £200 penalty. A further £200 penalty will also apply for each subsequent late submission while at the threshold, which varies to take account of monthly, quarterly and annual accounting periods.
  • Late payment penalties - If a VAT payment is more than 15 days overdue, businesses will pay a first late payment penalty. If the VAT payment is more than 30 days overdue, the first late payment penalty increases and a second late payment penalty will also apply. To help customers get used to the changes HMRC will not charge a first late payment penalty on VAT payments due on or before 31 December 2023, if businesses either pay in full or a payment plan is agreed within 30 days of the payment due date.
  • Payment plans - HMRC will help businesses that cannot pay their VAT bill in full. Customers may be able to set up a payment plan to pay their bill in instalments. After 31 December 2023, if a customer proposes a payment plan within 15 days of payment being due and HMRC agrees it, they would not be charged a late payment penalty, provided that they keep to the conditions of the payment plan. Late payment penalties can apply where proposals are made after the first 15 days, but the agreement of the payment plan can prevent them increasing.
  • Interest calculations - HMRC has introduced both late payment and repayment interest, which will replace previous VAT interest rules. This brings the new regime in line with other taxes.

HMRC is also reminding businesses to be mindful of scams as they adjust to the changes, urging them to not share the HMRC login details.

Things to note:

The deadline for submitting VAT returns online is usually one calendar month and 7 days after the end of an accounting period. This is also the deadline for paying HMRC. For example, for January to March 2023: the quarterly accounting period ends on 31 March 2023 and the deadline for submitting the VAT return online, and the payment deadline for that quarter, is 7 May 2023.

For late submission penalties, all customers will start on 0 points. This includes those on a default surcharge. Any customer who is on a default surcharge will still be liable to pay any associated charges already received.

If the penalty point threshold is reached, businesses can only remove points by completing a period of compliance, submitting all VAT returns by the deadline and submitting all outstanding returns for the previous 24 months.

Late submission penalties do not apply to a first VAT return if a business is newly VAT registered; final VAT return after a business cancels its VAT registration and one-off returns that cover a period other than a month, quarter or year.

The first late payment penalty is calculated as: two per cent on the VAT owed at day 15 - for VAT payment between 16 and 30 days overdue; two per cent on the VAT outstanding at day 15, plus two per cent of what is still outstanding at day 30 - for payment 31 days or more overdue.

The second late payment penalty is then calculated at a daily rate of four per cent per year on the outstanding balance and charged daily from day 31 until the outstanding balance is paid in full.

Late payment interest is charged from the day after the customer’s VAT payment is due until the day it is paid in full. It is calculated at the Bank of England base rate plus 2.5%.

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